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BIBLIOGRAPHY
This is a list of journal reports and other publications on
"Benthic Fluxes of Metals and Nutrients"
See Library for links grouped by study site
The publications below are listed in chronological order.
JOURNAL REPRINTS AVAILABLE
(1) Kuwabara, J.S., 1982, Micronutrients and Kelp Cultures: Evidence
for Cobalt and Manganese Deficiency in Southern California Deep Seawater:
Science v. 216, p. 1219-1221. Paper
(2) Kuwabara, J.S., Leland, H.V. and Bencala, K.E., 1984, Copper transport
along a Sierra Nevada stream: Journal of Environmental Engineering, v.
110, p. 646-655. Paper
(3) Kuwabara, J.S., Davis, J.A. and Chang, C.C.Y., 1985, Culturing Selenastrum
capricornutum (Chlorophyta) in a synthetic algal nutrient medium with
defined mineral particulates: Hydrobiologia, v. 124, p. 23-27. Paper
(4) Kuwabara, J.S., 1985, Phosphorus-zinc interactive effects on growth
by Selenastrum capricornutum (Chlorophyceae): Environmental Science and
Technology, v. 19, p. 417-421. Paper
(5) Kuwabara, J.S. and Leland, H.V., 1986, Adaptation by Selenastrum
capricornutum (Chlorophyceae) to copper: Environmental Toxicology and
Chemistry, v. 5, p. 197-203. Publisher's Site
(6) Kuwabara, J.S., Davis, J.A. and Chang, C.C.Y., 1986, Algal growth
response to particle-bound orthophosphate and zinc: Limnology and Oceanography,
v. 31, p. 503-511. Publisher's Site
(7) Chang, C.C.Y., Davis, J.A. and Kuwabara, J.S., 1987, Adsorption
of Zn (II) onto TiO in defined media with low suspended particle concentrations:
Estuarine Coastal and Shelf Science, v. 24, p. 419-424.
(8) Kuwabara, J.S., Chang, C.C.Y., Cloern, J.E., Fries, T.L., Davis, J.A. and Luoma, S.N., 1989, Trace metal associations in the water column of South San Francisco Bay, California: Estuarine Coastal and Shelf Science, v. 26, No. 3, p. 307-325.
(9) Kuwabara, J.S., Chang, C.C.Y. and Pasilis, S.P., 1990, Effects of
benthic flora on arsenic transport: Journal of Environmental Engineering,
v. 116, p. 394-409. Publisher's Listing
(10) Kuwabara, J.S. and Harvey, R.W., 1990, Application of a hollow-fiber
tangential-flow device for sampling suspended bacteria and particles
from natural waters: Journal of Environmental Quality, v. 19, p. 625-
629.
(11) Stream Solute Workshop, 1990, Concepts and methods for assessing
solute dynamics in stream ecosystems: Journal of the North American Benthological
Society, v. 9, p. 95-119
(12) Kuwabara, J.S., 1992, Associations between benthic flora and diel
changes in dissolved arsenic, phosphorus, and related physico-chemical
parameters: Journal of the North American Benthological Society, v. 11,
p. 218-228.
(13) Chang, C.C.Y., Kuwabara, J.S. and Pasilis, S.P., 1992, Phosphate
and iron limitation of phytoplankton biomass in Lake Tahoe: Canadian
Journal of Fisheries and Aquatic Sciences, v. 49, p. 1206-1215.
(14) Kuwabara, J.S., 1993, Dissolved sulfides in the oxic water column
of San Francisco Bay, California: Estuaries, v. 16, No. 3, p. 567-573.
(15) Kuwabara, J.S., Baker, J.E., 1993, Trace Contaminants and Nutrients
in Estuaries: The Importance of Process Interdependence: Estuaries, v.
16, No. 3A, p. 383-384.
(16) Tisue, T., Kender, J. and Chang C., 1993, 113mCd in Lake Tahoe:
Verh. Internat. Verein. Limnol., v. 25, p. 253-254.
(17) Hunter, Y.R., and Kuwabara, J.S., 1994, Ionic Strength and DOC
Determination From Various Freshwater Sources to the San Francisco Bay:
Bulletin of Environmental Contamination and Toxicology, v. 52, no. 2,
p. 311-318. Paper
(18) Wood, T.M., Baptista, A.M., Kuwabara, J.S. and Flegal, A.R., 1995,
Diagnostic modeling of trace metal partitioning in south San Francisco
Bay, Limnology and Oceanography, v. 40, no. 2, p. 345-358. Publisher's
Site
(19) Chang, C.C.Y. and Petersen, R., 1995, Evidence of autumn nitrogen
limitation and contribution of picoplankton to carbon fixation in Lake
Tahoe: Canadian Journal of Fisheries and Aquatic Sciences, v. 52, p.
54-62.
(20) Kuwabara, J.S. van Geen, A., McCorkle, D.C. and Bernhard, J., 1999,
Dissolved sulfide distributions in the water column and sediment pore
waters of the Santa Barbara Basin: Geochimica et Cosmochimica Acta, v.
63, No. 15, p. 2199-2209. Paper
(21) Zheng, Y., Anderson, R.F., van Geen, A. and Kuwabara, J.S., 2000.
Controls on authigenic Mo formation in marine sediments: linkage to pore-water
sulfide: Geochimica et Cosmochimica Acta, v. 64, No. 24, p. 4165-4178.
Abstract
(22) Kuwabara, J.S., Woods, P.F., Berelson, W.M., Balistrieri, L.S.,
Carter, J.L., Topping, B.R., Fend, S.V., 2003, Importance of sediment-water
interactions in Coeur d'Alene Lake, Idaho, USA: Management Implications:
Environmental Management, v. 32, No. 3, p. 348-359 Paper
(23) Topping, B.R. and Kuwabara, J.S., 2003, Dissolved-nickel and benthic flux in South San Francisco Bay: a potential for natural sources to dominate: Bulletin of Environmental Contamination and Toxicology, v. 71, p. 46-51 Paper
(24) Kuwabara, J.S., Arai, Yuji, Topping, B.R., Pickering, I. J., and George, G.N., 2007a, Mercury speciation in piscivorous fish from mining-impacted reservoirs: Environmental Science and Technology, v. 41, No. 8, p. 2745-2749.
(25) Kuwabara, J.S., Topping, B.R., Woods, P.F., and Carter, J.L., 2007b, Free zinc ion and dissolved orthophosphate effects on phytoplankton from Coeur d'Alene Lake, Idaho: Environmental Science and Technology, v. 41, No. 8, p. 2811-2817.
(26) Thompson, Bruce, Adelsbach, Terry, Brown, C.L., Hunt, Jennifer, Kuwabara, J.S., Neale, J.C.C., Ohlendorf, H.M., Schwarzbach, S.E., Spies, R.B., and Taberski, K.M., 2007, Biological Effects of Anthropogenic Contaminants in the San Francisco Estuary: Environmental Research, v. 105, p. 156-174.
(27) Gandhi, Nilima, Bhavsar, S.P., Diamond, M.L., Kuwabara, J.S., and Marvin-DiPasquale, Mark, 2007, Development of a mercury speciation, fate and biotic uptake (BIOTRANSPEC) model: application to Lahontan Reservoir, Nevada: Environmental Contamination and Toxicology, v. 26, p. 2260-2273.
(28) Stewart, A.R., Saiki, M.K., Kuwabara, J.S., Alpers, C.N., Marvin DiPasquale, M., and Krabbenhoft, D.P., 2008, Influence of plankton mercury dynamics and trophic pathways on mercury concentrations of top predator fish of a mining-impacted reservoir: Canadian Journal of Fisheries and Aquatic Sciences, v. 65, p. 2,351-2,366.
(29) Kuwabara, J.S., Topping, B.R., Lynch, D.D., Carter, J.L., Essaid, H.I., 2009, Benthic nutrient sources to hypereutrophic Upper Klamath Lake, Oregon: Environmental Toxicology & Chemistry, v. 28, p. 516-524.
(30) Kuwabara, J.S., Topping, B.R., Carter, J.L., Wood, T.M., Cameron, J.M., Asbill-Case, J.R., Carlson, R.A., 2012 Changes in benthic nutrient sources within a wetland after hydrologic reconnection: Environmental Toxicology & Chemistry,
v. 31 p. 1995-2013
OTHER REPRINTS AVAILABLE:
(1) Kuwabara, J.S., 1983, Effects of trace metals and natural organic
materials on coastal communities, In Bascom, W., ed., Effects of
Waste Disposal on Coastal Communities: Southern California Coastal
Water
Research Project, CA, p. 136-146. (2) Leland, H.V. and Kuwabara, J.S., 1985, Trace Metals, In Rand, G.M.
and Petrocelli, S.R., eds., Fundamentals of Aquatic Toxicola: Hemisphere
Publications, Chap. 13, N.Y., p. 374-415.
(3) Kuwabara, J.S., 1986, Physico-chemical processes affecting copper,
tin and zinc toxicity to algae, In Evans, L.V. and Hoagland, K.D., eds.,
Algal Biofouling, Chapter 9: Elsevier Science Publishers, Amsterdam,
Netherlands, p. 129-144.
(4) Kuwabara, J.S. and Helliker, P. 1988, Trace contaminants in streams,
In Cheremisinoff, P.N., Cheremisinoff, N.P. and Cheng, S.L., eds., Encyclopedia
of Civil Engineering Practice, Chapter 26: Technomic Press, v. 5, p.
739-766.
(5) Kuwabara, J.S., Chang, C.C.Y. and Pasilis, S.P., 1988, Effects of
algal growth on arsenic transport in Whitewood Creek, South Dakota: Preliminary
Results, In Mallard, G.E., ed., U.S. Geological Survey Toxic Substance
Hydrology Program - Surface-Water Contamination: Proceedings of the Technical
Meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey
Open File Report 87-764, p. 33-37.
(6) Kuwabara, J.S. and Robinson, J.R., 1988, Development of a hollow
fiber tangential flow filtration system for concentration of suspended
sediment samples from natural waters, In G.E. Mallard, ed., U.S. Geological
Survey Toxic Substance Hydrology Program - Surface-Water Contamination:
Proceedings of the Technical Meeting, Denver, Colorado, February 2-4,
1987: U.S. Geological Survey Open File Report 87-764, p.157-160.
(7) Kuwabara, J.S., Cain, D.J., Carter, J.L. and Fend, S.V., 1988, Biological
investigations - Surface-Water Toxics Program, Whitewood Creek and the
Belle Fourche and Cheyenne Rivers, South Dakota, In Goddard, K.E., ed.,
U.S. Geological Survey Applied Research Studies of the Cheyenne River
System, South Dakota: Description and Collation of Data, Water Years
1985-86: U.S. Geological Survey Open File Report 88-484, p. 148-158.
(8) Kuwabara, J.S., Chang, C.C.Y. and S.P. Pasilis, 1989, Periphyton
effects on arsenic transport in Whitewood Creek, South Dakota, In Mallard,
G.E. and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances
Hydrology Program - Proceedings of the technical meeting, Phoenix, Arizona,
September 26-30, 1988: U.S. Geological Survey Water Resources Investigations
Report 88-4220, p. 247-256. Paper
(9) Chang, C.C.Y., Kuwabara, J.S. and Pasilis, S.P., 1990, Trace-metal
concentrations in three streams during spring runoff in the Tahoe Basin,
California/Nevada, In Poppoff, I.G., Goldman, C.R., Loeb, S.L. and Leopold,
L.B., eds., Proceedings of the International Watershed Symposium, Lake
Tahoe, June 8-10, 1988: Tahoe Research Conservation District, p. 103-115.
(10) Kuwabara, J.S., Hunter, Y.R. and Chang, C.C.Y., 1996, Distributions
and benthic flux of dissolved sulfides in the oxic water column of San
Francisco Bay, California, In Morganwalp, D.W., and Aronson, D.A., eds.,
U.S. Geological Survey Toxic Substances Hydrology Program -- Proceedings
of the Technical Meeting, Colorado Springs, Colorado, September 20-24,
1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015,
p. 747-751. Abstract
(11) Kuwabara, J.S., Chang, C.C.Y., and Pasilis, S.P., 2003, Effects
of the benthic flora on arsenic transport in Whitewood Creek, South Dakota,
in Toxic substances in surfaces waters and sediments -- a study to assess
the effects of arsenic-contaminated alluvial sediment in Whitewood Creek,
South Dakota: U.S. Geological Survey Water-Supply Paper (WSP) 2345-A,
47 p., in press.
(12) Kuwabara, J.S., Chang, C.C.Y., Khechfe, A.I. and Hunter, Y.R.,
1996, Implications of dissolved sulfides and organic substances for the
chemical speciation of trace contaminants in the water column of San
Francisco Bay, California, in Hollibaugh, J.T., ed., San Francisco Bay:
the Ecosystem: Amercian Association for the Advancement of Science, Pacific
Division, San Francisco, p. 157-172.
(13) Caffrey, J., Hammond, D., Kuwabara, J., Miller, L. and Twilley,
R., 1996, Benthic processes in San Francisco Bay: the role of organic
inputs and bioturbation, in Hollibaugh, J.T., ed., San Francisco Bay:
the Ecosystem: Amercian Association for the Advancement of Science, Pacific
Division, San Francisco, p. 425-442. Paper
(14) Kuwabara, J.S., van Geen, A., McCorkle, D.C. and Bernhard, J.,
Topping, B.R., Zheng, Y., 1999, Redox gradients in the Santa Barbara
Basin: Application of techniques developed in the San Franscisco Bay
Toxics Study, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological
Survey Toxic Substances Hydrology Program--Proceedings of the Technical
Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination
of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey
Water-Resources Investigations Report 99-4018B, p. 121-130. Paper
(15) Kuwabara, J.S., Nichols, F.H., Kuivila, K.M., and Dileo, J.S.,
1999, Understanding the Human Influence on the San Francisco Bay-Delta
Estuary Ecosystem - The Toxic Substances Hydrology Program and USGS Place-based
Studies Program Provide Complimentary Approaches and Results, in Morganwalp,
D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances
Hydrology Program--Proceedings of the Technical Meeting, Charleston,
South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic
Systems and Related Ecosystems: U.S. Geological Survey Water-Resources
Investigations Report 99-4018B, p. 109-113. Paper
(16) Topping, B.R., and Kuwabara, J.S., 1999, Flow-injection-ICP-MS
method applied to benthic flux studies of San Francisco Bay, in Morganwalp,
D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances
Hydrology Program--Proceedings of the Technical Meeting, Charleston,
South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic
Systems and Related Ecosystems: U.S. Geological Survey Water-Resources
Investigations Report 99-4018B, p. 131-134. Paper
(17) Kuwabara, J.S., Topping, B.R., Berelson, W.M., and Coale, K.H.,
1999, Processes Affecting the Benthic Flux of Trace Metals into the Water
Column of San Francisco Bay, in Morganwalp, D.W., and Buxton, H.T., eds.,
U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings
of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume
2 of 3--Contamination of Hydrologic Systems and Related Ecosystems: U.S.
Geological Survey Water-Resources Investigations Report 99-4018B, p.
115-119. Paper
(18) Kuwabara, J.S., and Kuivila, K.M., 1999, The San Francisco Bay-Estuary
Toxics Study: Sustained progress in a unique estuarine laboratory, in
Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic
Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston,
South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic
Systems and Related Ecosystems: U.S. Geological Survey Water-Resources
Investigations Report 99-4018B, p. 9-10. Paper
(19) Esberg, G., 1999, McKelvey Federal Building, Menlo Park, California:
Far from generic research spaces that convert to meet changing needs,
these labs support specific uses and take the long view (project-chief
interview): Architectural Record, v. 6, p. 170-172.
(20) Kuwabara, J.S., Berelson, W.M., Balistrieri, L.S., Woods, P.F., Topping, B.R., Steding, D.J., and Krabbenhoft, D.P., 2000, Benthic flux of metals and nutrients into the water column of Lake Coeur d’Alene, ID: Report of an August, 1999 Pilot Study: U.S. Geological Survey Water Resources Investigations Report 00-4132, 90 p.: http://water.usgs.gov/pubs/wri/wri004132/.
(21) Topping, B.R., Kuwabara, J.S., Parchaso, F, Hager, S.W., Arnsberg, A.J., and Murphy, F., 2001, Benthic flux of dissolved nickel into the water column of South San Francisco Bay: U.S. Geological Survey Open-file Report 01-89, 50 p.: http://pubs.water.usgs.gov/ofr01089/.
(22) Kuwabara, J.S., Marvin-Dipasquale, M., Praskins, W., Byron, E., Topping, B.R., Carter, J.L., Fend, S.V., Parchaso, F. and Krabbenhoft, D.P., 2002, Flux of dissolved forms of mercury across the sediment-water interface in Lahontan Reservoir, Nevada: U.S. Geological Survey Water Resources Investigations Report 02-4138, 48 p.: http://water.usgs.gov/pubs/wri/wri024138/.
(23) Kuwabara, J.S., Alpers, C.N., Marvin-Dipasquale, Topping, B.R., Carter, J.L., Stewart, A.R., Fend, S.V., Parchaso, F., Moon, G.E., and Krabbenhoft, D.P., 2003, Sediment-water Interactions Affecting Dissolved-mercury Distributions in Camp Far West Reservoir, California: U.S. Geological Survey Water Resources Investigation Report 03-4140, 61 p.: http://water.usgs.gov/pubs/wri/wri034140/.
(24) Kuwabara, J.S., Chang, C.C.Y., and Pasilis, S.P., 2003, Effects of benthic fauna on arsenic transport in Whitewood Creek, South Dakota in Kuwabara, J.S., and Fuller, C.C., eds., Toxic substances in surface waters and sediments -- A study to assess the effects of arsenic-contaminated alluvial sediment in Whitewood Creek, South Dakota: U.S. Geological Survey Professional Paper 1681, p. 1-26: http://pubs.water.usgs.gov/pp1681.
(25) Topping, B.R., Kuwabara, J.S., Marvin-DiPasquale, M.C., Agee, J.L, Kieu, L.H., Flanders, J.R., Parchaso, F., Hager, S.W., Lopez, C.B. and Krabbenhoft, D.P., 2004, Sediment Remobilization of Mercury in South San Francisco Bay, California: U.S. Geological Survey Scientific Investigations Report 2004-5196, 60p.: http://pubs.water.usgs.gov/sir2004-5196.
(26) Kuwabara, J.S., Topping, B.R., Moon, G.E., Husby, P., Lincoff, A., Carter, J.L., Croteau, M.N., 2005, Mercury Accumulation by Lower Trophic-level Organisms in Lentic Systems within the Guadalupe River Watershed, California: U.S. Geological Survey Scientific Investigations Report 2005-5037, 52 p.: http://pubs.usgs.gov/sir/2005/5037.
(27) Kuwabara, J.S., Topping, B.R., Woods, P.F., Carter, J.L., and Hager, S.W., 2006, Interactive effects of dissolved zinc and orthophosphate on phytoplankton from Coeur d'Alene Lake, Idaho: U.S. Geological Survey Scientific Investigations Report 2006-1034, 47 p.: http://pubs.usgs.gov/sir/2006/5091.
(28) Kuwabara, J.S., Lynch, D.D., Topping, B.R., Murphy, F., Carter, J.L., Simon, N.S., Parchase, F., Wood, T.M., Lindenberg, M.K., Wiese, K., Avanzino, R.J., 2007, Quantifying the Benthic Source of Nutrients to the Water Column of Upper Klamath Lake, Oregon: U.S. Geological Survey Open File Report 2007-1276, 39 p.: http://pubs.usgs.gov/of/2007/1276.
(29) Topping, B.R. Kuwabara, J.S., Athearn, N.D., Takekawa, J.Y., Parchaso, F., Henderson, K.D. and Piotter, S., 2009, Benthic Oxygen Demand in Three Former Salt Ponds Adjacent to South San Francisco Bay, California: U.S. Geological Survey Open-file Report 2009-1180, 25 p. (Internet access at: http://pubs.usgs.gov/of/2009/1180/).
(30) Kuwabara, J.S., Topping, B.R., Parchaso, F., Engelstad, A.C., and Greene, V.A., 2009, Benthic Flux of Nutrients and Trace Metals in the Northern Component of San Francisco Bay, California: U.S. Geological Survey Open-file Report 2009-1286, 30 p. (Internet access at: http://pubs.usgs.gov/of/2009/1286/).
(31) Kuwabara, J.S., Topping, B.R., Carter, J.L., Parchaso, F., Asbill, J.R., Cameron, J.M., Fend, S.V., Duff, J.H., and Engelstad, A.C., 2010, The transition of benthic nutrient sources after planned levee breaches adjacent to Upper Klamath and Agency Lakes, Oregon: U.S. Geological Survey Open-File Report 2010-1062, 21 p. (Internet access at: http://pubs.usgs.gov/of/2010/1062/) .
(32) Kuwabara, J.S., Topping, B.R., Carter, J.L., Wood, T.M., Parchaso, F., Cameron, J.M., Asbill, J.R., Carlson, R.A., and Fend, S.V., 2012, Time scales of change in chemical and biological parameters after engineered levee breaches adjacent to Upper Klamath and Agency Lakes, Oregon: U.S. Geological Survey Open-File Report 2012-1057, 26 p. (Internet access at: http://pubs.usgs.gov/of/2012/1057/)
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