A list of references is provided below. References are listed in reverse chronological order.

2010 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000 1999 1998 1997 1996 1995 1994 1993 1992 1991 1990 1989 1988 1987 1986 1985 1984 1983 1982 1981 1980 1979 1978 1977 1976

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Reprints and preprints are available upon request.
Please order by citation number (bracketed: {Reprint # 123}).

To order, please contact:

Stacey Andrews
U.S. Geological Survey, MS 465
345 Middlefield Road
Menlo Park, California 94025
sandrews@usgs.gov

2012
Misra, SK., Dybowska, A., Berhanu, D., Croteau, M.-N., Luoma, SN., Boccaccini, AR., Valsami-Jones, E. 2012. Isotopically modified nanoparticles for enhanced detection in bioaccumulation studies. Environ. Sci. Technol. 46: 1216-1222

2011
Janssen, EML., Thompson, JK., Luoma, SN., Luthy, RG. 2011. PCB-Induced changes of a benthic community and expected ecosystem recovery following in situ sorbent amendment. Environ. Toxicol. Chem. 30: 1819-1826.

Croteau, M.-N., Misra, S.K., Luoma, S.N. & Valsami-Jones, E. 2011. Silver bioaccumulation in a freshwater invertebrate after aqueous and dietary exposures to nanosized and ionic Ag. Environ. Sci. Technol. 45: 6600-6607 Supporting information

Cain, D., Croteau, MN, & Luoma, SN. 2011. Bioaccumulation dynamics and exposure routes of Cd and Cu among species of aquatic mayflies. Environ. Toxicol. Chem. 30: 2532-2541

Garcia-Alonso, J., Khan, F.R., Misra, S.K., Turmaine, M., Smith, B.D., Rainbow, P.S., Luoma, S.N. & Valsami-Jones, E. 2011. Cellular internalization of silver nanoparticles in gut epithelia of the estuarine polychaete Nereis diversicolor. Environ. Sci. Technol. 45: 4630-4636

Croteau, M.-N., Dybowska, A.D., Luoma, S.N., Valsami-Jones, E. 2011. A novel approach reveals that zinc oxide nanoparticles are bioavailable and toxic after dietary exposures. Nanotoxicology, 5(1): 79-90

Fabrega, J., Luoma, S.N., Tyler, C.R., Galloway, T.S. & Lead, J.R. 2011. Silver nanoparticles: Behaviour and effects in the aquatic environment. Environ. Internat. 37: 517-531

Dybowska, A.D., Croteau, M.-N., Misra, S.K., Bernahu, D., Luoma, S.N., Christian P., O'Brian, P. & Valsami-Jones, E. 2011. The synthesis of isotopically modified ZnO nanoparticles allows tracing their fate in biota. Environ.Pollut. 159: 266-273

2010
Presser T.S., & Luoma, S.N. 2010. A methodology for ecosystem-scale modeling of selenium. Integr. Environ. Assess. Management. 6(4): 685-710. Full article Supporting information

Kleckner, A.E., Stewart, A.R., Elrick, K., and Luoma, S.N., 2010, Selenium concentrations and stable isotopic compositions of carbon and nitrogen in the benthic clam Corbula amurensis from Northern San Francisco Bay, California: May 1995–February 2010: U.S. Geological Survey Open-File Report 2010-1252, 34 p.

Stewart, R., Grosell M., Buchwalter D., Fisher, N., Luoma, S., Mathews, T., Orr, P., Wang. W-X. 2010. Chapter 5. Bioaccumulation and trophic transfer of selenium. Pp 94 - 130, In Ecological Assessment of Selenium in the Aquatic Environment. Edited by P.M. Chapman, W.J. Adams, M.L. Brooks, C.G. Delos, S.N. Luoma, W.A. Maher, H.M. Ohlendorf, T.S. Presser and D.P. Shaw. SETAC Press, Pensacola, Florida.

Bouse, R.M., Fuller, C.C., Luoma, S.N., Hornberger, M.I., Jaffe, B.E., Smith, R.E. May 2010. Mercury-contaminated hydraulic mining debris in San Francisco Bay. San Francisco Estuary & Watershed Sci. pp 1-28. Full article

Janssen, E. M. L., Croteau, M.-N., Luoma, S. N., Luthy, R. G. 2010. Measurement and modeling of polychlorinated biphenyl bioaccumulation from sediment for the marine polychaete Neanthes arenaceodentata and response to sorbent amendment. Environ. Sci. Technol. 44: 2857-2863. Full article Supporting Information

Luoma, S. N., Cain, D. J. and Rainbow, P. S. 2010. Calibrating biomonitors to ecological disturbance: A new technique for explaining metal effects in natural waters. Integrated Environmental Assessment and Management. Vol. 6(2): 199-209. Full article

2009
Presser, T.S., and Luoma, S.N., 2009, Modeling of selenium for the San Diego Creek watershed and Newport Bay, California: U.S. Geological Survey Open-File Report 2009-1114, 48 p.

Luoma, S.N., 2009, Ingredients in sustainably managing water in semi-arid environments: Environmental Science & Policy, v. 12, no. 6, p. 737-740.

Grimaldo, L.F., Stewart, A.R., and Kimmerer, W., 2009, Dietary segregation of pelagic and littoral fish assemblages in a highly modified tidal freshwater estuary: Marine Coastal Fisheries: Dynamics, Management and Ecosystems Sciences, v. 1, no. 1, p. 200-217.

Dodge, K.A., Hornberger, M.I., and Dyke, J.L., 2009. Water- quality, bed sediment, and biological data (October 2007 through September 2008) and statistical summaries of data for streams in the Upper Clark Fork Basin, Montana. U. S. Geological Survey Open File Report 2009-1178. Helena, Montana. 139p.

Chasar, L.C., Scudder, B.C., Stewart, A.R., Bell, A.H., and Aiken, G.R., 2009, Mercury cycling in stream ecosystems. 3. Trophic dynamics and methylmercury bioaccumulation: Environmental Science and Technology, v. 43, no. 8, p. 2733–2739

Dyke, J.L., Parchaso, F., Thompson, J.K., Cain, D.J., Luoma, S.N., and Hornberger, M.I., Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California: 2009, U.S. Geological Survey Open-File Report 2010-1188, 142 p.

Chapman PM, Adams WJ, Brooks ML, Delos CG, Luoma SN, Maher WA, Ohlendorf HM, Presser TS, Shaw DP. 2009. Ecological assessment of selenium in the aquatic environment: Summary of a SETAC Pellston Workshop. Pensacola FL (USA): Society of Environmental Toxicology and Chemistry (SETAC). Full summary http://www.setac.org/node/265

Berhanu, D., Dybowska, A., Misra, S.K., Stanley, C.J., Ruenraroengsak, P., Boccaccini, A.R., Tetley, T.D., Luoma, S.N., Plant, J.A., and Valsami-Jones, E., 2009, Characterisation of carbon nanotubes in the context of toxicity studies: Environmental Health, v. 8(Suppl 1)

Casado-Martinez, M. C. B.D. Smith, S.N. Luoma, P.S. Rainbow 2009. Biodynamic modelling and the prediction of accumulated trace metal concentrations in the polychaete Arenicola marina, Environmental Pollution, 157: 2743-2750. Full article

Luoma, S. N. and Presser, T. S. 2009. Emerging opportunities in management of selenium contamination. Environ. Sci. Technol. 43: 8483-8487. Full article

Hornberger, M. I., Luoma, S. N., Johnson, M. J., Holyoak, M. 2009. The influence of remediation in a mine-impacted river: do improvements upstream impact metal trends over large spatial and temporal scales? Ecological Applications 19: 1522-1535. Full article

Rainbow, P. S., Smith, B. D. and Luoma, S. N. 2009. Differences in the bioaccumulation kinetics of trace metals among populations of the polychaete Nereis diversicolor from metal-contaminated estuaries. Marine Ecology Progress Series 376: 173-184.Full article

Presser, T.S., and Luoma, S.N., 2009, Modeling of selenium for the San Diego Creek watershed and Newport Bay, California: U.S. Geological Survey Open-File Report 2009-1114, 48 p. http://pubs.usgs.gov/of/2009/1114/ Full Report

Croteau, M.-N., Luoma, S.N. 2009. Predicting dietborne metal toxicity from metal influxes. Environ. Sci. Technol. 43: 4915-4921. Full article Supporting Information

2008
Luoma, S.N. 2008. Silver nanotechnologies and the environment: Old problems or new challenges? Woodrow Wilson International Centar for Scholars. Project on Emerging Nanotechnologies (PEN) 15, 66p. {Reprint #218} Full article

Valsami-Jones, E, D. Berhanu, A. Dybowska, S. Misra, A.R. Boccaccini, T.D. Tetley, S.N. Luoma, J.A. Plant. 2008. Nanomaterial synthesis and characterisation for toxicological studies: TiO2 case study. Mineralogical Magazine, 72: 515-519. Full article

Buchwalter, D.B., Cain, D.J., Martin, C.A., Xie, L., Luoma, S.N., and Garland, T., Jr. 2008, Aquatic insect ecophysiological traits reveal phylogenetically based differences in dissolved cadmium susceptibility. Proc. Nat. Acad. Sci., vol. 105 (24): 8321-8326. {Reprint # 217} Full article Supporting Information

Lorenzi, A.H., Cain, D. J., Parchaso, F. Thompson, J.K., Luoma, S.N., Hornberger, M.I., Dyke, J.L. 2008. Near-Field Receiving Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2007. U.S. Geological Survey Open File Report 2008-1180. Menlo Park, California. 127pp. {Reprint # 216}

Dodge, K.A., Hornberger, M.I., and Dyke, J.L., 2008. Water- quality, bed sediment, and biological data (October 2006 through September 2007) and statistical summaries of data for streams in the Upper Clark Fork Basin, Montana. U. S. Geological Survey Open File Report 2008-1318. Helena, Montana. 132p.

Alpers, C.N., Stewart, A.R., Saiki, M.K., Marvin-DiPasquale, M.C., Topping, B.R., Rider, K.M., Gallanthine, S.K., Kester, C.A., Rye, R.O., Antweiler, R.C., and De Wild, J.F., 2008, Environmental factors affecting mercury in Camp Far West Reservoir, California, 2001–03: U.S. Geological Survey Scientific Investigations Report 2006-5008, 358 p.

Stewart, A.R., Saiki, M.K., Kuwabara, J.S., Alpers, C.N., Marvin-DiPasquale, M., and Krabbenhoft, D.P. 2008. Influence of plankton mercury dynamics and trophic pathways on mercury concentrations of top predator fish of a mining-impacted reservoir. Can.J.Fish.Aquat.Sci. 65: 2351-2366. {Reprint #215} Full article

Hare, L.; Tessier, A.; Croteau, M.-N. (2008) A biomonitor for tracking changes in the availability of lakewater cadmium over space and time. Hum. Ecol. Risk Assess. 14: 229-242 {Reprint #214} Full article

Croteau, MN; Luoma, S.N. (2008) A biodynamic understanding of dietborne metal uptake by a freshwater invertebrate. Environ. Sci. Technol. 42: 1801-1806 {Reprint #212} Full article Supporting Information

McLeod, P. B.; Luoma, S. N.; Luthy, R. G. (2008) Biodynamic Modeling of PCB Uptake by Macoma balthica and Corbicula fluminea from Sediment Amended with Activated Carbon. Environ. Sci. Technol. 42: 484-490. {Reprint #211} Full article

2007
Martin, C. A.; Luoma, S. N.; Cain, D. J.; Buchwalter, D. B. (2007) Cadmium Ecophysiology in Seven Stonefly (Plecoptera) Species: Delineating Sources and Estimating Susceptibility. Environ. Sci. Technol. 41: 7171-7177. {Reprint #210} Full article

McLeod, P. B., Van den Heuvel-Greve, M. J., Luoma, S.N., Luthy, R.G. (2007) Biological uptake of polychlorinated biphenyls by Macoma balthica from sediment amended with activated carbon. Environ. Toxicol. Chem. 26: 980-987. {Reprint #205} Full article

Lorenzi, A.H., Cain, D. J., Parchaso, F. Thompson, J.K., Luoma, S.N., Hornberger, M.I., Dyke, J.L., Cervantes, R., Shouse, M. K. 2007. Near-Field Receiving Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2006. U.S. Geological Survey Open File Report 2007-1199. Menlo Park, California. 128pp. {Reprint # 208}

Dodge, K.A., Hornberger, M.I., and Dyke, J.L., 2007. Water- quality, bed sediment, and biological data (October 2005 through September 2006) and statistical summaries of data for streams in the Upper Clark Fork Basin, Montana. U. S. Geological Survey Open File Report 2007-1301. Helena, Montana. 124p.

Buchwalter, D.B., Cain, D.J., Clements, W.H., and S.N. Luoma. (2007). Using biodynamic models to reconcile differences between laboratory toxicity tests and filed biomonitoring with aquatic insects. Environ. Sci. Technol. 41: 4821-4828 {Reprint # 207} Full article

Croteau, M.-N., Luoma, S.N., and B. Pellet. (2007). Determining metal assimilation efficiency in aquatic invertebrates using enriched stable metal isotope tracers. Aquat. Toxicol. 83: 116-125 {Reprint # 206} Full article

Thompson, B., Adelsbach, T., Brown, C., Hunt, J, Kuwabara, J. Neale, J., Ohlendorf, H., Schwartzbach, S., Spies, R., and Taberski, Karen. (2007). Biological effrects of anthropogenic contaminants in the San Francisco bay estuary. Environ. Res. 105: 156-174 {Reprint # 201} Full article

Flegal, A. R., Brown, C., Squire, S., Ross, J.R.M., Schelfo, G., and Hibdon, S. (2007). Spatial and temporal varations in silver contamination and toxicity in San Francisco Bay. Environ. Res. 105: 34-52 {Reprint # 202} Full article

Croteau, M.-N. and Luoma, S.N. (2007). Characterizing dissolved Cu and Cd uptake in terms of the biotic ligand and biodynamics using enriched stable isotopes. Environ. Sci. Technol. 41: 3140-3145 {Reprint # 203} Full article Supporting Information

von Stackelberg,K. Luoma S., McCormick R., Skrabis K., Dorward-King E., and Polasky, S. (2007) Chapter 5. Complexity in Ecological Systems. pp.98-128. In Valuation of Ecological Resources: Integration of Ecological Risk Assessment and Socioeconomics in Environmental Decision Making. RG Stahl Jr, LA Kapustka, WR Munns Jr, RJF Bruins (Eds) SETAC Press, Pensacola.

Marvin-DiPasquale, M., Stewart, A.R., Fisher, N.S., Pickhardt, P., Mason, R.P., Heyes, A., and Winham-Myers, L., 2007, Evaluation Of Mercury Transformations and Trophic Transfer in the San Francisco Bay/Delta: Identifying Critical Processes for the Ecosystem Restoration Program: Annual Report for Project # ERP-02-P40 to the California Bay Delta Authority (CBDA), 39 p.

Luoma, S. N. (2007) Case Study 6: The CALFED Bay-Delta Program: A Case Study in Intertwined Ecological and Environmental Resource Issues. pp. 209-218 In Valuation of Ecological Resources: Integration of Ecological Risk Assessment and Socioeconomics in Environmental Decision Making. RG Stahl Jr, LA Kapustka, WR Munns Jr, RJF Bruins (Eds) SETAC Press, Pensacola.

2006
Presser, T.S. and Luoma, S.N. , 2006, Forecasting selenium discharges to the San Francisco Bay-Delta Estuary: Ecological effects of a proposed San Luis Drain extension: U.S. Geological Survey Professional Paper 1646, 196 p. {Reprint # 142a} Full Article

Rainbow. P.S., Poirier, L., Smith, B.D., Brix, K.V., and Luoma, S. N. (2006) Trophic transfer of trace metals from the polychaete worm Nereis diversicolor to the polychaete N. virens and the decapod crustacean Palaemonetes varians. Mar. Ecol. Prog. Ser. 321: 167-181.{Reprint # 200} Full Article

Lee, B.-G., Lee, J.-S., and Luoma, S.N. (2006) Comparison of selenium bioaccumulation in the clams Corbicula fluminea and Potamocorbula amurensis: A bioenergetic modeling approach. Environ. Toxicol. Chem. 25: 1933-1940. {Reprint # 198} Full Article

Cain, D. J., Parchaso, F. Thompson, J.K., Luoma, S.N., Lorenzi, A.H., Moon, E., Shouse, M. K., Hornberger, M.I., and J.L. Dyke. 2006. Near-Field Receiving Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2005. U.S. Geological Survey Open File Report 2006-1152. Menlo Park, California. 128pp.

Rainbow. P.S., Poirier, L., Smith, B.D., Brix, K.V., and Luoma, S. N. (2006) Trophic transfer of trace metals: subcellular compartmentalization in a polychaete and assimilation by a decapod crustacean. Mar. Ecol. Prog Ser. V. 308:91-100{Reprint # 196} Full Article

Cain, J.D., Buchwalter, D.B., and Luoma, S.N. (2006) Influence of metal exposure history on the bioaccumulation and subcellular distribution of aqueous cadmium in the insect Hydropsyche californica. Environ. Toxicol. Chem. 25: 1042-1049. {Reprint # 197} Full Article

2005
Buchwalter, D. B., and Luoma, S. N. (2005) Differences in dissolved cadmium and zinc uptake among stream insects:Mechanistic Explanations. Environ. Sci & Tech. V. 39, p. 498-504.{Reprint # 185}
Full Article (Adobe pdf, 310kb)

Croteau, M.-N., Luoma, S.N. and A. R. Stewart (2005) Trophic transfer of metals along freshwater food webs: Evidence of Cd biomagnification in nature. Limnology and Oceanography 50: 1511-1519 {Reprint # 191}
Full Article

Croteau, M.-N. and Luoma, S.N. (2005) Delineating copper accumulation pathways for the freshwater bivalve Corbicula using stable copper isotopes. Environmental Toxicology and Chemistry 24: 2871-2878 {Reprint # 192}
Full Article

Luoma, S.N. and Rainbow, P.S. (2005) Why is metal bioaccumulation so variable? Biodynamics as a unifying concept. Environmental Science & Technology. {Reprint # 184}
Full Article (Adobe pdf, 310kb)

Moon, E., Shouse, M. K., Parchaso, F. Thompson, J.K., Luoma, S.N., Cain, D. J. and Hornberger, M.I., 2005, Near-Field Receiving Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2004. U.S. Geological Survey Open File Report 2005-1279. Menlo Park, California. 118pp. {Reprint # 188}
Full Report (Adobe pdf, 1.1mb)

Rainbow, P.S., and Luoma, S.N. (2005) Lessons from history: a Cornish tale. SETAC Globe, v.6(2), pp 25-26.{Reprint # 190}

2004
Brown, C. L., Luoma, S. N., Parchaso, F., and Thompson, J. K. (2004). Lessons learned about metals in the estuary: The importance of long-term clam accumulation data. San Francisco Estuary Institute (SFEI). 2004. The Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Estuary. SFEI Contribution 78. San Francisco Estuary Institute, Oakland, CA 24, 38-45. {Reprint # 181}
Full Article (Adobe pdf, 2mb) Full Publication (Adobe pdf, 12mb)

Cain, D. J., Luoma, S. N., and Wallace, W. G. (2004). Linking metal bioaccumulation of aquatic insects to their distribution patterns in a mining-impacted river. Environmental Toxicology and Chemistry 23(6), 1463-1473. {Reprint # 178}
Full Article (Adobe pdf, 170kb)

Croteau, M-N., Luoma, S. N., Topping, B. R. and Lopez, C. B. (2004) Stable Metal Isotopes Reveal Copper Accumulation and Loss Dynamics in the Freshwater Bivalve Corbicula. Environmental Science & Technology 38, 5002-5009. {Reprint # 183}
Full Article (Adobe pdf, 115kb)

Dodge, K. A., Hornberger, M. I. And Lavigne, I. R. (In cooperation with the US EPA) (2004) Water Quality, Bed-Sediment, and Biological Data (October 2002 through September 2003) and Statistical Summaries of Data for Streams in the Upper Clark Fork Basin, Montana. Open-File Report 2004-1340, 2004. {Reprint # 186}
Full Report (Adobe pdf, 115kb)

Luoma, S. N. (2004) Foreword: Research and Assessment Needs for Pallid Sturgeon Recovery in the Missouri River. Final report to the US Geological Survey, US Army Corps of Engineers, US Fish and Wildlife Service, and US Environmental Protection Agency. Quist, M.C., Boetler, A. M., Lovato, J. M., Korfanta. N.M., Bergman, H.L., Latka, D. Cl, Korschgen, C., Galat, D. L., Krentz, S., Oetker, M., Olson, M., Scott, C.M., and Berkley, J. William D. Ruckelshaus Institute of Environment and Natural Resources, University of Wyoming, Laramie. i-ii. {Reprint # 187}
Forward (Adobe pdf, 190kb) Full Publication (Adobe pdf, 7.4mb)

Luoma, S. N. and Cloren, J. E. (2004). The CalFed Bay-Delta Program. US Department of the Interior, People, Land & Water, 23. {Reprint # 179}

McLeod, P. B., van den Heuvel-Greve, J., len-King, R. M., Luoma, S. N., and Luthy, R. G. (2004). Effects of particulate carbonaceous matter on the bioavailability of Benzo{a}pyrene and 2,2', 5,5'- tetrachlorobiphenyl to clams. Environmental Science & Technology 38(17) 4549-4556. {Reprint # 177}
Full Article (Adobe pdf, 100kb)

Edward Moon,Samuel N. Luoma, Daniel J. Cain, Michelle I. Hornberger and Carlos Primo C. David, 2004, Near Field Receiving Water Monitoring of Trace Metals in Clams (Macoma Balthica) and Sediments near the Palo Alto Water Quality Control Plant in South San Francisco Bay: 2003. U.S. Geological Survey Open File Report 2004-1213. Menlo Park, California. 84pp.
Full Report (Adobe pdf, 850mb)

Schlekat, C. E., Purkerson, D. G. and Luoma, S. N. (2004) Modeling selenium bioaccumulation through arthropod food webs in San Francisco Bay, California, USA. Environmental Toxicology and Chemistry 23(12) p. 3003-3010, {Reprint # 182}
Full Article (Adobe pdf, 80kb)

Stewart, AR, Luoma, SN, Schlekat, CE, Doblin, MA and Hieb, KA. (2004) Food web pathway determines how selenium affects aquatic ecosystems: A San Francisco Bay case study. Environmental Science & Technology 38(17):4519-4526. {Reprint # 169}
Full Article (Adobe pdf, 300kb)

Yoo, H., Lee, J. S., Lee, G. G., Lee, I. T., Schlekat, C. E., Koh, C. H., and Luoma, S. N. (2004). Uptake pathway for Ag bioaccumulation in three benthic invertebrates exposed to contaminated sediments. Marine Ecology Progress Series 270, 141-152. {Reprint # 180}
Full Document Adobe pdf, 126kb

2003
Brown, C. L., Parchaso, F., Thompson, J. K., and Luoma, S. N. (2003). Assessing toxicant effects in a complex estuary: A case study of effects of silver on reproduction in the bivalve, Potamocorbula amurensis, in San Francisco Bay. International Journal of Human and Ecological Risk Assessment 9, 96-119. {Reprint # 170}
Full Article (Adobe pdf, 500kb)

Davis, J. A., Yee, D., Collins, J. N., Schwarzbach, S., and Luoma, S. N. (2003). Issues in San Francisco Estuary Tidal Wetlands Restoration: Potential for Increased mercury Accumulation in the Estuary Food Web. San Francisco Estuary and Watershed Science 1, 28. {Reprint # 171}
Full Article (Adobe pdf, 80kb)

Lee, J. S., Lee, B. G., Luoma, S. N., and Yoo, H. (2003). Importance of equilibration time in the partitioning and toxicity of zinc in spiked-sediment bioassays. Environmental Toxicology and Chemistry 23, 65-71. {Reprint # 175}
Full Article (Adobe pdf, 150kb)

Luoma, S. N.(2003). An Opportunity for Scientists and Policy Makers Alike. San Francisco Estuary and Watershed Science 1. {Reprint # 174}
Full Article (Adobe pdf, 80kb)

Maret, T. R., Cain, D. J., MacCoy, D. E., and Short, T. M. (2003). Response of benthic invertebrate assemblages to metal exposure and bioaccumulation associated with hard-rock mining in northwestern streams, USA. Journal of the North American Benthological Society 22, 598-620.
{Reprint # 176} Full Article (Adobe pdf, 350kb)

Purkerson, D. G., Dobin, M. A., Bollens, S. M., Luoma, S. N., and Cutter, G. A. (2003). Selenium in San Francisco Bay Zooplankton: Potential effects of hydrodynamics and food web interactions. Estuaries 26, 956-969. {Reprint # 156}
Full Articlef (Adobe pdf, 600kb)

Wallace, W. G. and Luoma, S. N. (2003). Subcellular compartmentalization of Cd and Zn in two bivalves. II. Significance of trophically available metal (TAM). Marine Ecology Progress Series 257, 125-137. {Reprint # 173}
Full Article (Adobe pdf, 800kb)

Wallace, W. G., Lee, B. G., and Luoma, S. N. (2003). Subcellular compartmentalization of Cd and Zn in two bivalves. I. Significance of metal-sensitive fractions (MSF) and biologically detoxified metal (BDM). Marine Ecology Progress Series 249, 183-197. {Reprint # 161}
Full Article (Adobe pdf, 170kb)

2002
Baines, S. B., Fisher, N. S., and Stewart, A. R. (2002). Assimilation and retention of selenium and other trace elements from crustacean food by juvenile striped bass (Morone saxatilis). Limnology and Oceanography 47, 646-655. {Reprint # 163}
Full Article (Adobe pdf, 200kb)

Dodge, K. A., Hornberger, M. I., and David, C. P. (2002). Water-Quality, Bed-sediment and biological Data (October 2000 through September 2001) and Statistical Summaries of Data for Streams in the Upper Clark Fork Basin, Montana. Open-File Report 02-358. U.S. Geological Survey. {Reprint # 165}
Full Report

Griscom, S. B., Fisher, N. S., and Luoma, S. N. (2002). Kinetic modeling of Ag, Cd and Co bioaccumulation in the clam Macoma balthica: quantifying dietary and dissolved sources. Marine Ecology Progress Series 240, 127-141. {Reprint # 162}
Full Article (Adobe pdf, 100kb)

Hymanson, Z. and Luoma, S. N. (2002). Workshop Summary Water Operations and Environmental Protection in the Delta: Scientific Issues. A CALFED Bay-Delta Science Program Workshop. 2002. Sacramento, CA. 4-22-2002. {Reprint # 172}
Full Document (Adobe pdf, 1mb)

Jacobs, K. L., Luoma, S. N., and Taylor, K. A. (2002). CalFed, An experiment in science and decisionmaking. Environment 45, 30-41. {Reprint # 167}
Full Article (Adobe pdf, 2.5mb)

Linville, R., Luoma, S. N., Cutter, L., and Cutter, G. A. (2002). Increased selenium threat as a result of invasion of the exotic bivalve Potamocorbula amurensis in the San Francisco Bay. Aquatic Toxicology 57, 51-64. {Reprint # 144}
Full Article (Adobe pdf, 300kb)

Luoma, S. N. (2002). Processes affecting trophic transfer and resultant effects of metals: implicatioFull Article ns for monitoring metal pollution in the sea. In 'CIESM, MFull Articleetal and radionuclides bioaccumulation in marine organisms, DIESM Workshop Monographs, Monaco, 19,'. pp. 75-78.). {Reprint # 168}

Luoma, S. N., Brown, S. S., Foster, W. G., Leckie, J. O., Teisl, M. F., Thomas, J. K., and Williams-Fleetwood, S. O. (2002). Inter-connections Between Human Health and Ecological Integrity: Characteristics and Implications. In 'Inter-connections Between Human Health and Ecological Integrity'. (Eds R. T. Di Giulio and W. H. Benson.) pp. 65-100.(SETAC Press, Pensacola, FL). {Reprint # 164}

Luoma, S. N., Hogstrand, C., Bell, R. A., Bielmyyer, G. K., Galvez, F., LeBlanc, G. A., Lee, B. G., Purcell, T. W., Santore, R. C., Santschi, P. H., and Shaw, J. R. (2002). Biological Processes. In 'Silver in the Environment: Transport, Fate and Effects'. (Eds A. W. Andren and T. W. Bober.) pp. Chapter.(SETAC Press). {Reprint # 166}

Schlekat, C. E., Lee, B. G., and Luoma, S. N. (2002). Assimilation of selenium from phytoplankton by three benthic invertebrates: Effect of phytoplankton species. Marine Ecology Progress Series 237, 79-85. {Reprint # 152}
Full Article (Adobe pdf, 180kb)

Schlekat, C. E., Lee, B. G., and Luoma, S. N. (2002). Dietary metals exposure and toxicity to aquatic Organisms: Implications for ecological risk Assessment. In 'Coastal and Estuarine Risk Assessment'. (Eds M. C. Newman, M. H. Roberts, and R. C. Hale.) pp. Chapter.(Lewis Publishers). {Reprint # 155}

 2001
Carter, J. L. and Fend, S. V. (2001). Inter-annual changes in the benthic community structure of riffles and pools in reaches of contrasting gradient. Hydrobiologia 459, 187-200. {Reprint # 160}
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Carter, J. L. and Resh, V. H. (2001). After site selection and before data analysis: sampling, sorting, and laboratory procedures used in stream benthic macroinvertebrate monitoring programs by USA state agencies. Journal of the North American Benthological Society 20, 658-682. {Reprint # 159}
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Clements, W. H., Luoma, S. N., Gerritsen, J., Hatch, A., Jepson, P., Reynoldson, T., and Thom, R. (2001). Stressor Interactions in Ecological Systems. In 'Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment'. (Eds D. J. Baird and J. Burton.) pp. Chapter.(SETAC Press). {Reprint # 147}

Dodge, K. A., Hornberger, M. I., and David, C. P. (2001). Water-Quality, Bed-sediment and biological Data (October 1999 through September 2000) and Statistical Summaries of Data for Streams in the Upper Clark Fork Basin, Montana. Open-File Report 01-379. U.S. Geological Survey. {Reprint # 158}
Full Report

Giddings, E. M., Hornberger, M. I., and Hadley, H. K. (2001). Trace-Metal concentrations in sediment and water and health of aquatic macroinvertebrate communities of streams near Park City, Summit County, Utah. Water Resources Investigations Report 01-4213. U.S. Geological Survey. {Reprint # 157}
Full Report

Lee, J. S., Lee, B. G., Yoo, H., Koh, C. H., and Luoma, S. N. (2001). Influence of reactive sulfide (AVS) and supplementary food on Ag, Cd and Zn bioaccumulation in the marine polychaete, Neanthes arenaceodentata. Marine Ecology Progress Series 216, 129-140. {Reprint # 148}
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Luoma, S. N., Clements, W. H., Gerritsen, J., Jepson, P., Hatch, A., Reynoldson, T., and Thom, R. (2001). Separating stressor influences from environmental variability: Eight Case Studies from Aquatic and Terrestrial Ecosystems. In 'Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment'. (Eds D. J. Baird and J. Burton.) pp. Chapter.(SETAC Press). {Reprint # 146}

Luoma, S. N., Clements, W. H., DeWitt, T., Gerritsen, J., Hatch, A., Jepson, P., Reynoldson, T., and Thom, R. (2001). Role of Environmental Variability in Evaluating Stressor Effects. In 'Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment'. (Eds D. J. Baird and J. Burton.) pp. Chapter.(SETAC Press). {Reprint # 145}

2000
Cain, D. J., Carter, J. L., Fend, S. V., Luoma, S. N., Alpers, C. N., and Taylor, H. E. (2000). Metal exposure to a benthic macroinvertebrate, Hydropsyche californica, related to mine drainage in the Sacramento River. Can. J. Fish. Aquat. Sci. 57, 380-390. {Reprint # 134}
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Dodge, K. A., Hornberger, M. I., and David, C. P. (2000). Water-Quality, Bed-sediment and biological Data (October 1998 through September 1999) and Statistical Summaries of Data for Streams in the Upper Clark Fork Basin, Montana. Open-File Report 00-370. U.S. Geological Survey. {Reprint # 153}
Full Report

Emmett, R., Thom, R., Morgan, C., Copping, A., Llanso, R., Newton, Hornberger, M., Levings, C., and Fishman, P. (2000). Geographic Signatures of North American West Coast Estuaries. Estuaries 23, 765-792. {Reprint # 154}
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Griscom, S. B., Fisher, N. S., and Luoma, S. N. (2000). Geochemical influence on assimilation of sediment-bound metals in clams and mussels. Environmental Science & Technology 34, 91-99. {Reprint # 140}
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Hornberger, M. I., Luoma, S. N., Cain, D. J., Parchaso, F., Brown, C. L., Bouse, R. M., Wellise, C., and Thompson, J. K. (2000). Linkage of bioaccumulation and biological effects to changes in pollutant loads in South San Francisco Bay. Environmental Science & Technology 34, 2401-2409. {Reprint # 132a}
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Lee, B. G., Griscom, S. B., Lee, J. S., Choi, H. J., Koh, C. H., Luoma, S. N., and Fisher, N. S. (2000). Influence of dietary uptake and reactive sulfides on metal Bioavailability from sediments. Science 14, 282-284. {Reprint # 137}
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Lee, B. G., Lee, J. S., Luoma, S. N., Choi, H. J., and Koh, C. H. (2000). Influence of acid volatile sulfide on the metal concentrations on metal bioavailability to marine invertebrates in contaminated sediments. Environmental Science & Technology 34, 4517-4523. {Reprint # 139}
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Lee, J. S., Lee, B. G., Luoma, S. N., Choi, H. J., Koh, C. H., and Brown, C. L. (2000). Influence of acid volatile sulfides and metal concentrations on metal partitioning in contaminated sediments. Environmental Science & Technology 34, 4511-4516. {Reprint # 138}
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Luoma, S. N. and Presser, T. S. (2000). Forecasting Selenium Discharges to the San Francisco Bay-Delta Estuary: Ecological Effects of a Proposed San Luis Drain Extension. Open-File Report 00-416. U.S. Geological Survey. {Reprint # 142}
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Moulton, S. R., Carter, J. L., Grotheer, S. A., Cuffney, T. F., and Short, T. M. (2000). Methods of analysis by the US Geological Survey National Water Quality Laboratory-Processing, Taxonomy, and quality control of benthic macroinvertebrate samples. Open File Report 00-212. U.S. Geological Survey. {Reprint # 150}
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Schlekat, C. E. and Luoma, S. N. (2000). You are what you eat: Incorporating dietary metals uptake into environmental quality guidelines for aquatic ecosystems. SETAC Globe 1, 38-39. {Reprint # 143}

Schlekat, C. E., Dowdle, P. R., Lee, B. G., Luoma, S. N., and Oremland, R. S. (2000). Bioavailability of particle-associated Se to the bivalve Portamocorbula amurensis. Environmental Science & Technology 34, 4504-4510. {Reprint # 151}
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1999
Dodge, K. A., Hornberger, M. I., and Bouse, R. M. (1999). Water quality, bed-sediment, and biological data (October 1997 through September 1998) and statistical summaries of data for streams In the Upper Clark Fork Basin, Montana. Open-File Report 99-251. U.S. Geological Survey. {Reprint # 141}
Full Report

Fuller, C. C., van Geen, A., Baskaran, M., and Anima, R. (1999). Sediment chronology in San Francisco Bay, California, defined by 210Pb, 234Th, 137CS, and 239,240Pu. Marine Chemistry 64, 7-27. {Reprint # 122}
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Hornberger, M., Luoma, S., Cain, D., Parchaso, F., Brown, C., Bouse, R., Wellise, C., and Thompson, J. (1999). Bioaccumulation of metals by the bivalve Macoma balthica at a site In South San Francisco Bay between 1977 and 1997: Long-term trends and associated biological effects with changing pollutant loadings. Open File Report 99-55, 42. U.S. Geological Survey. {Reprint # 132}

Hornberger, M. I., Luoma, S. N., van Geen, A., Fuller, C., and Anima, R. (1999). Historical trends of trace metals in the sediments of San Francisco Bay, California. Marine Chemistry 64, 39-65. {Reprint # 117)
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Hostettler, F. D., Pereira, W. E., Kvenvolden, K. A., van Geen, A., Luoma, S. N., Fuller, C. C., and Anima, R. J. (1999). A record of contaminant input to San Francisco Bay as traced by biomarker profiles in surface sediment and sediment cores. Marine Chemistry 64, 115-127. {Reprint # 121}
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Luoma, S. N. (1999). Emerging Contaminant Issues from an Ecological Perspective. USGS Toxic substances Hydrology Program- Proceedings. V2: Contamination of Hydrologic Systems. Water Resources Investigation 99-4018B, 3-6. U.S. Geological Survey. {Reprint # 136}
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Pereira, W. E., Hostettler, F. D., Luoma, S. N., van Geen, A., Fuller, C. C., and Anima, R. J. (1999). Sedimentary record of anthropogenic and biogenic polycyclic aromatic hydrocarbons In San Francisco Bay, California. Marine Chemistry 64, 99-113. {Reprint # 120}
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Ringwood, A. H., Jameedi, M. J., Lee, R. F., Brouwer, M., Peters, E. C., Scott, G. I., Luoma, S. N., and DiGiulio, R. T. (1999). Bivalve Biomarker Workshop: overview and discussion group summaries: overview and discussion group summaries. In 'Bivalve Biomarker Workshop'. (Ed e. a. Ringwood.) pp. 391-399.). {Reprint # 133}

Ritson, P. I., Bouse, R. M., Flegal, A. R., and Luoma, S. N. (1999). Stable lead isotopic analyses of historic and contemporary lead contamination of San Francisco Bay estuary. Marine Chemistry 64, 71-83. {Reprint # 125}
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Teh, S. J., Clark, S. L., Brown, C. L., Luoma, S. N., and Hinton, D. E. (1999). Enzymatic and histopathologic biomarkers as indicators of contaminant exposure and effect in Asian Clam (Potamocorbula amurensis). Biomarkers 4, 497-509. {Reprint # 131}
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van Geen, A. and Luoma, S. N. (1999). A record of estuarine water contamination from the Cd content of foraminifera in San Francisco Bay, California. Marine Chemistry 64, 57-69. {Reprint # 123}
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van Geen, A. and Luoma, S. N. (1999). The impact of human activities on sediments of San Francisco Bay: An overview. Marine Chemistry 64, 1-6. {Reprint # 119}
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van Geen, A., Valette-Sliver, N. J., Luoma, S. N., Fuller, C. C., Baskaran, M., Tera, F., and Klein, J. (1999). Constraints on the sedimentation history of San Francisco Bay from 14C and 10Be. Marine Chemistry 64, 29-38. {Reprint # 124}
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Venkatesan, M. I., de Leon, R. P., van Geen, A., and Luoma, S. N. (1999). Chlorinated hydrocarbon pesticides and polychlorinated biphenyls in sediment cores from San Francisco Bay. Marine Chemistry 64, 85-97. {Reprint # 118}
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1998
Brown, C. L. and Luoma, S. N. (1998). Metal trends and effects in Potamocorbula amurensis in North San Francisco Bay. Interagency Ecological Program for the Sacramento-San Joaquin Estuary Newsletter 11, 33-35. {Reprint # 130}
Full Article (Adobe pdf, 700kb)

Cain, D. J. and Luoma, S. N. (1998). Metal exposures to native populations of the Caddisfly Hydropsyche (Tricoptera: Hydropsychidae) determined from cytosolic and whole body metal concentrations. Hydrobiologia 386, 103-117. {Reprint # 126}
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Cain, D. J., Carter, J. L., Fend, S. V., Luoma, S. N., Alpers, C. N., and Taylor, H. E. (1998). Metal exposure to a benthic invertebrate, Hydropsyche californica, in the Sacramento River downstream of Keswick Reservoir, California. Open File Report 98- 654. U.S. Geological Survey. {Reprint # 149}
Full Report

Fisher, N. S., Wang, W. X., and Luoma, S. N. (1998). Modeling the bioaccumulation of trace metals in Marine herbivores. Rapp. Comm. Int. Mer. Medit. 35, 264-265. {Reprint # 114}

Hutchins, D. A., Stupakoff, I., Hook, S., Luoma, S. N., and Fisher, N. S. (1998). Effects of arctic temperatures on uptake and retention of the nuclear waste radionuclides 241Am, 57Co and 137Cs by the bioindicator bivalve Macoma balthica. Marine Environmental Research 45, 17-29. {Reprint # 107}
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Lee, B. G. and Luoma, S. N. (1998). Influence of microalgal biomass on absorption efficiency of Cd, Cr, and Zn by two bivalves from San Francisco Bay. Limnology and Oceanography 43, 1455-1466. {Reprint # 116}
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Lee, B. G., Wallace, W. G., and Luoma, S. N. (1998). Uptake and loss kinetics of Cd, Cr and Zn in the bivalves Potamocorbula amurensis and Macoma balthica: Effects of size and salinity. Marine Ecology Progress Series 175, 177-189. {Reprint # 129}
Abstract

Luoma, S. N., van Geen, A., Lee, B. G., and Cloern, J. E. (1998). Metal uptake by phytoplankton during a bloom In South San South San Francisco Bay: Implications for metal cycling in estuaries. Limnology and Oceanography 43, 1007-1016. {Reprint # 112)
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Reinfelder, J. R., Fisher, N. S., Luoma, S. N., Nichols, J. W., and Wang, W. X. (1998). Trace element trophic transfer in aquatic organisms: a critique of the kinetic model approach. Science of the Total Environment 219, 117-135. {Reprint # 127}
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1997
Axtmann, E. V., Cain, D. J., and Luoma, S. N. (1997). Effect of tributary inflows on the distribution of trace metals in fine-grained bed sediments and benthic insects of the Clark Fork River, Montana. Environmental Science & Technology 31, 750-758. {Reprint # 90}
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Hornberger, M. I., Lambing, J. H., Luoma, S. N., and Axtmann, E. V. (1997). Spatial and temporal trends of trace metals in water, bed sediment, and biota of the Upper Clark Fork Basin, Montana: 1985-1995. Open-File Report 95-440. U.S. Geological Survey. {Reprint # 109}

Luoma, S. N. and Linville, R. (1997). Selenium trends in North San Francisco Bay. Interagency Ecological Program for the Sacramento-San Joaquin Estuary Newsletter 10, 25-26. {Reprint # 115}
Full Article

Luoma, S. N. and Fisher, N. (1997). Uncertainties in assessing contaminant exposure from sediments. In 'Ecological Risk Assessments of Contaminated Sediments'. (Eds T. Dillon and G. Biddinger.) pp. 211-237.(SETAC Press). {Reprint # 102}

Nichols, F. H. and Luoma, S. N. (1997). long-term investigations provide fundamental insight in to natural and human-induced change in the san francisco bay (usa) estuary. (European Commission, Brussels.) {Reprint # 96}

Reinfelder, J. R., Wang, W. X., Luoma, S. N., and Fisher, N. S. (1997). Assimilation efficiencies and turnover rates of trace elements in marine bivalves: a comparison of oysters, clams, and mussels. Marine Biology 129, 443-452. {Reprint # 108}
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1996
Carter, J. L., Fend, S. V., and Kennelly, S. S. (1996). The relationships among three habitat scales and stream benthic invertebrate community structure. Freshwater Biology 35, 109-124. {Reprint # 105}
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Dodge, K. A., Hornberger, M. I., and Axtmann, V. (1996). Water quality, bed-sediment, and biological data (October 1994 through September 1995) and statistical summaries of data for streams in the Upper Clark Fork Basin, Montana. Open-File Report 96-4. U.S. Geolgical Survey. {Reprint # 111}
Full Report

Fuhrer, G. J., Cain, D. J., McKenzie, S. W., Rinella, J. F., Crawford, J. K., Skach, K. A., and Hornberger, M. I. (1996). Surface-water-quality assessment of the Yakima River Basin in Washington: spatial and temporal sediment, and aquatic biota, 1987-91. Open-File Report 95-440. U.S. Geological Survey. {Reprint # 110}
Order Report

Luoma, S. N.(1996). The developing framework of marine ecotoxicology: Pollutants as a variable in marine ecosystems? Journal of Experimental Marine Biology and Ecology 200, 29-55. {Reprint # 104}
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van Geen, L. and Husby, D. M. (1996). Cadmium in the California current system: Tracer of past and present upwelling. Journal of Geophyical Research 101, 3489-3507. {Reprint # 88}
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Wang, W. X., Fisher, N. S., and Luoma, S. N. (1996). Kinetic determinations of trace element bioaccumulation in the mussel, Mytilus edulis. Marine Ecology Progress Series 140, 91-113. {Reprint # 103}
Abstract

1995
Brown, C. L. and Luoma, S. N. (1995). Energy-related selenium and vanadium contamination in San Francisco Bay, California --- Effects on biological resources? Energy and the Environment--Application of Geosciences to Decision-Making, Program and short papers: Tenth V. E. McKelvey Forum on Mineral and Energy Resources. Circular 1108, 91-92. U.S. Geological Survey. {Reprint # 95}
View Abstrac & Order Report

Brown, C. L. and Luoma, S. N. (1995). Use of the euryhaline bivalve Potamocorbula amurensis as a biosentinel species to assess trace metal contamination in San Francisco Bay. Marine Ecology Progress Series 124, 129-142. {Reprint # 93}
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Cain, D. J., Luoma, S. N., and Axtmann, E. V. (1995). Influence of gut content in immature aquatic insects on assessments of environmental metal contamination. Can. J. Fish. Aquat. Sci. 52, 2736-2746. Full article {Reprint # 101}

Fend, S. V. and Carter, J. (1995). The relationship of habitat characteristics to the distribution of Chironomidae (Diptera) as measured by pupal exuviae collections in a large river system. Freshwater Ecology 10, 343-359. {Reprint # 106}

Luoma, S. N. (1995). Prediction of Metal Toxicity In Nature from Bioassays: Limitations and Research Needs. In 'Metal Speciation and Bioavailability in Aquatic Systems'. (Eds A. Tessier and D. Turner.) pp. 609-646.(John Wiley and Sons, Ltd. London). {Reprint # 82}

Luoma, S. N. and Linville, R. (1995). a comparison of selenium and mercury concentrations in transplanted and resident bivalves from north san francisco bay. (San Francisco Estuary Institute.) {Reprint # 113}
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Luoma, S. N. and Nichols, F. H. (1995).Challenges in detecting contaminant effects on an estuarine ecosystem affected by many different disturbances: San Francisco Bay. US Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Colorado Springs, CO., Sept. 20-24, 1993. Water Resources Investigation Report 94-4015, 689-693. U.S. Geological Survey. {Reprint # 87}

Luoma, S. N., Ho, Y. B., and Bryan, G. W. (1995). Bioavailability and toxicity of silver in estuarine environments. Marine Pollution Bulletin 31, 44-54. {Reprint # 94}
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Luoma, S. N.(1995). Pathway models could aid management of contaminants. Interagency Ecological Program for the Sacramento-San Joaquin Estuary Newsletter Spring 1995. {Reprint # 100}

Wang, W. X., Fisher, N. S., and Luoma, S. N. (1995). Assimilation of trace metals ingested by the mussel, Mytilus edulis: effects of algal food abundance. Marine Ecology Progress Series 129, 165-176. {Reprint # 98}
Abstract

1994
Cloern, J., Luoma, S. N., and Nichols, F. (1994). San Francisco Bay Program: Lessons Learned for Managing Coastal Water Resources. Fact Sheet 053-95. U.S. Geological Survey. {Reprint # 99)
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Decho, A. W. and Luoma, S. N. (1994). Humic and fluvic acids: Sink or source in the availability of metals to the marine bivalves Macoma balthica and Potamocorbula amurensis? Marine Ecology Progress Series 108, 133-145. {Reprint # 86}

Lambing, J. H., Hornberger, M. I., Axtmann, E. V., and Pope, D. A. (1994). Water-Quality, bed-sediment, and biological data (October 1992 through September 1993) and statistical summaries of water-quality data (March 1985 through September 1993) for streams In the Upper Clark Fork Basin, Montana. Open File Report 94-375, 104. U.S. Geological Survey. {Reprint # 97}
Full Report

Luoma, S. N.(1994). Book review, No Quick Fix, a review on "Restoring the Nation's Marine Environment". California Coast & Ocean 10. {Reprint # 91}

Luoma, S. N., Hsieh, P. A., Betancourt, Cayan, D., Hill, M. C., Robertson, D. M., Vecchia, A. V., Wagner, B. J., and Helsel, D. R. (1994). Guidelines for determination of water quality trends in the National Water-Quality Assessment Program. Open File Report 94-___. U.S. Geological Survey. {Reprint # 92}

1993
Crawford, J. K. and Luoma, S. N. (1993). Guidelines for studies of contaminants in biological tissues for the National Water-Quality Assessment Program. Open-File Report 92-494. US Geological Survey. {Reprint # 81}
Full Report

Luoma, S. N. and Ho, K. T. (1993). Appropriate uses of marine and estuarine sediment bioassays. In 'The Handbook of Ecotoxicology'. (Ed P. Calow.)). {Reprint # 77}

Luoma, S. N.(1993). Understanding the toxicity of contaminants in sediments: Beyond the bioassay-based paradigm. Environmental Toxicology and Chemistry 12, 793-796. {Reprint # 85}

Luoma, S. N., Cain, D. J., Brown, C., and Hornberger, M. (1993). Trace metals in clams (Macoma balthica) and sediments at the Palo Alto mudflat in South San Francisco Bay: June 1992 to May 1993. US Geological Survey Open File Report 93-500. U.S. Geological Survey. {Reprint # 76)
Full Report

van Geen, A. and Luoma, S. N. (1993). Trace metals (Cd, Cu, Ni, Zn) and nutrients in coastal waters adjacent to San Francisco Bay, California. Estuaries 16, 569-666. {Reprint # 84}

1992
Cain, D. J., Luoma, S. N., Carter, J. L., and Fend, S. V. (1992). Aquatic insects as bioindicators of trace element contamination in cobble-bottom rivers and streams. Can. J. Fish. Aquat. Sci. 49, 2141-2154. Full article {Reprint # 79}

Luoma, S. N., Johns, C., Fisher, N. S., Steinberg, N. A., Oremland, R. S., and Reinfelder, J. (1992). Determination of selenium Bioavailability to a benthic bivalve from particulate and solute pathways. Environmental Science & Technology 26, 485-491. {Reprint # 72}
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Luoma, S. N., Cain, D. J., Brown, C., and Hornberger, M. (1992). Trace metals in clams (Macoma balthica) and sediments at the Palo Alto mudflat in South San Francisco Bay: May 1991 to May 1992. US Geological Survey Open File Report 92- 456, Updated. U.S. Geological Survey. {Reprint # 76}
Full Report

Moore, J. N. and Luoma, S. N. (1992). Hazardous wastes from large-scale metal extraction: The Clark Fork Waste Complex, Montana. In 'Proceedings of Clark Fork River Symposium'. pp. 163-198.: University of Montana, Missoula). {Reprint # 63a}
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van Geen, A., Luoma, S. N., Fuller, C. C., Anima, R., Clifton, H. E., and Trumbore, S. (1992). Evidence from Cd/Ca ratios in foraminifera for greater upwelling off California 4,000 years ago. Nature 358, 54-56. {Reprint # 80}
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1991
Axtmann, E. V. and Luoma, S. N. (1991). Large-scale distribution of metal contamination in the fine-grained sediments of the Clark Fork River, Montana. Applied Geochemistry 6, 75-88. {Reprint # 64}
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Cain, D. J. and Luoma, S. N. (1991). Benthic insects as indicators of large-scale trace metal contamination in the Clark Fork River, Montana. U S Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California. Water Resources Investigations Report 91-4034, 525-529. U.S. Geological Survey. {Reprint # 83}
Full Report

Decho, A. W. and Luoma, S. N. (1991). Time-courses in the retention of food material in the bivalves Potamocorbula amurensis and Macoma balthica: Significance to the absorption of carbon and chromium. Marine Ecology Progress Series 78, 303-314. {Reprint # 75}

Luoma, S. N.(1991). Book Review: Imperiled Planet: Restoring Our Endangered Ecosystems. Bioscience 41, 6430. {Reprint # 73}

Luoma, S. N., Cain, D. J., Brown, C., and Axtmann, E. (1991). Trace metals in clams (Macoma balthica) and sediments at the Palo Alto mudflat in South San Francisco Bay: April 1990 to April 1991. US Geological Survey Open File Report 91- 460, 47. U.S. Geological Survey. {Reprint # 76)
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Luoma, S. N., Carter, J., and Brown, C. (1991). Assessing adverse effects of contaminants on benthic species at the San Francisco Toxics Site. Toxic Substances Hydrology Program. Water Resources Investigation Report 91-4034, 667-672. U.S. Geological Survey. {Reprint # 74}
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Moore, J. N., Luoma, S. N., and Peters, D. (1991). Downstream effects of mine effluent in an intermountaine riparian system. Can. J. Fish. Aquat. Sci. 48, 222-232. {Reprint # 60}

1990
Axtmann, E. V., Cain, D. J., and Luoma, S. N. (1990). Distribution of trace metals in fine-grained bed sediments and benthic insects in the Clark Fork River, Montana. In '1990 Clark Fork Symposium'. pp. 1-18.: University of Montana, Missoula). {Reprint # 70}
Full Article

Cain, D. J. and Luoma, S. N. (1990). Influence of seasonal growth, age and environmental exposure on Cu and Ag in a bivalve indicator, Macoma balthica, in San Francisco Bay. Marine Ecology Progress Series 60, 45-55. {Reprint # 61}

Cain, D. J. (1990). studies using the clam macoma balthica to identify bioavailable trace metals in san francisco bay. (San Francisco Bay-Delta Aquatic Habitat Institute.) {Reprint # 78}

Johns, C. and Luoma, S. N. (1990). Arsenic in benthic bivalves of San Francisco Bay and the Sacramento/San Joaquin River Delta. Science of the Total Environment 97/98, 673-684. {Reprint # 62}
Full Article (Adobe pdf, 600kb)

Luoma, S. N. and Carter, J. L. (1990). Effects of trace metals on aquatic benthos. In 'Metal Ecotoxicology: Concepts and Applications'. (Eds M. Newman and A. McIntosh.) pp. 261-287.(Lewis Publishers). {Reprint # 71}

Luoma, S. N. (1990). Processes affecting metal concentrations in estuarine and coastal marine sediments. In 'Metals in Marine Environment'. (Ed R. F. Rainbow.) pp. 51-66.(CRC Press). {Reprint # 58}

Luoma, S. N. (1990). Teaching Environmental Science. Book Review of Environmental Ecology: The Impacts of Pollution and Other Stresses on Ecosystem Structure and Function. Bioscience 40, 612-613. {Reprint # 68}
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Luoma, S. N., Dagovitz, R., and Axtmann, E. (1990). Temporally intensive study of trace metals in sediments and bivalves from a large river-estuarine system: Suisun Bay/Delta In San Francisco Bay. Science of the Total Environment 97/98, 685-712. {Reprint # 48}

Moore, J. N. and Luoma, S. N. (1990). Hazardous wastes from large scale metal extraction: A case study. Environmental Science & Technology 24, 1279-1285. {Reprint # 63}
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1989
Decho, A. W. and Luoma, S. N. (1989). Flexible digestion strategies and trace metal assimilation in marine bivalves. Limnology and Oceanography 41, 568-572. {Reprint # 89}
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Hostettler, F. D., Rapp, J. B., Kvenvolden, K. A., and Luoma, S. N. (1989). Organic markers as source discriminants and sediment transport indicators in south San Francisco Bay, California. Geochimica et Cosmochimica Acta 53, 1563-1576. {Reprint # 59}
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Kuwabara, J. S., Chang, C. C. Y., Cloern, J. E., Fries, T. L., Davis, J. A., and Luoma, S. N. (1989). Trace metal associations in the watercolumn of South San Francisco Bay. Estuarine Coastal and Shelf Science 28, 307-325. {Reprint # 52}
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Luoma, S. N., Axtmann, E. V., and Cain, D. J. (1989). Fate of mine wastes in the Clark Fork River, Montana. In 'Metalloids in the Hydrosphere; Impact Through Mining and Industry, and Prevention Technology in tropical Environments'. pp. 63-75.(Asian Institute of Technology: Bangkok, Thailand). {Reprint # 66}

Luoma, S. N.(1989). Can we determine the biological availability of sediment-bound trace elements? Hydrobiologia 176/177, 379-396. {Reprint # 51}

1988
Cain, D. J., Fend, S. V., and Carter, J. L. (1988). Temporal and spatial variability of arsenic in benthic insects from Whitewood Creek, South Dakota. U.S. Geological Survey Toxic Substances Hydrology Program-Proceedings of the Technical Meeting, Phoenix, Arizona, September 26-30, 1988. Water-Resources Investigations Report 88-4220, 257-268. U.S. Geological Survey. {Reprint # 65}
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Campbell, P., Lewis, P. A., Chapman, P., Crowder, A., Fletcher, W., Imber, B., Luoma, S. N., Stokes, and Winfrey, M. (1988). Biologically available metals in sediments. National Research Council, C. Publication No. NRCC 27694, 300. Publications, NRCC/CNRC. {Reprint # 69}

Johns, C. and Luoma, S. N. (1988). Selenium accumulation in benthic bivalves and fine sediments of San Francisco Bay, the Sacramento-San Joaquin Delta, and selected tributaries. Estuarine, Coastal, and Shelf Science 27, 381-396. {Reprint # 53}

Kuwabara, J. S., Cain, D. J., Carter, J. L., and Fend, S. V. (1988). Biological investigations--Surface water toxics program - Whitewood Creek and the Belle Fourche and Cheyenne Rivers, South Dakota. U.S. Geological Survey Applied Research studies of the Cheyenne River System, South Dakota. Open File Report 88-484, 148-158. U.S. Geological Survey. {Reprint # 50}
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Luoma, S. N. and Phillips, D. J. H. (1988). Distribution, variability and impacts of trace elements in San Francisco Bay. Marine Pollution Bulletin 19, 413-425. {Reprint # 56}
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Luoma, S. N.(1988). Detection of trace contaminant effects in aquatic ecosystems. J. Fish. Res. Bd. Can. 34, 436-439. {Reprint # 8}

Luoma, S. N. (1988). Research for San Francisco Bay: An editorial by Luoma, S.N. Commission, S. F. B. C. Bay Tidings. {Reprint # 57}

1987
Axtmann, E. V. and Luoma, S. N. (1987). Trace metal distributions in floodplain and fine bed sediments of the Clark Fork River, Montana. In 'Heavy Metals in the Environment'. (Ed S. E. L. Hutchinson.) pp. 494-496.(CEP Consultants Ltd.). {Reprint # 55}

Cain, D. J., Thompson, J. K., and Luoma, S. N. (1987). The Effect of differential growth on spatial comparisons of copper content of a bivalve indicator. In 'Heavy Metals in the Environment'. (Ed S. E. L. Hutchinson.) pp. 455-457.(CEP Consultants Ltd). {Reprint # 54}

Cain, D. J., Fend, S. V., and Carter, J. L. (1987). Arsenic concentrations of selected benthic insects In Whitewood Creek and the Belle Fourche River, South Dakota. U.S. Geological Survey Toxic Substances Hydrology Program--Surface- Water Contamination: Proceedings of the Technical Meeting, Denver, February Open File Report 87-764, 55-60. U.S. Geological Survey. {Reprint # 49}
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Johns, C. and Luoma, S. N. (1987). Accumulation of selenium in benthic bivalves and fine-grained sediments of San Francisco Bay, the Sacramento-San Joaquin Delta, and selected tributaries, 1984-86. Open-File Report 87-562, 29. US Geological Survey. {Reprint # 53a}
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Luoma, S. N.(1987). Book review of Ecotoxicology by L. Rasmussen (ed) 1984, 604 p. Earth Science Reviews 24, 142. {Reprint # 47}

1986
Cain, D. J. and Luoma, S. N. (1986). Effect of seasonally changing tissue weight on trace metal concentrations in the bivalve Macoma balthica in San Francisco Bay. Marine Ecology Progress Series 28, 209-217. {Reprint # 41}

Johansson, C., Cain, D. J., and Luoma, S. N. (1986). Variability In the fractionation of Cu, Ag, and Zn among cytosolic proteins in the bivalve Macoma balthica. Marine Ecology 28, 87-97. {Reprint # 37}

Luoma, S. N. (1986). Bioavailability of Sediment-Bound Metals. The Role of Sediments in the Chemistry of Aquatic Systems. Circular 969, 32-66. U. S. Geological Survey. {Reprint # 28}
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Luoma, S. N. (1986). Cycling of lead into food webs In aquatic environments. In 'Report for the Commission on Lead in the Environment'. pp. 146-161.(Royal Society of Canada). {Reprint # 45}

Luoma, S. N.(1986). A comparison of two methods for determining copper partitioning in oxidized sediments. Marine Chemistry 20, 45-59. {Reprint # 46}
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Nichols, F. H., Cloern, J. E., Luoma, S. N., and Peterson, D. H. (1986). The modification of an estuary. Science 231, 567-673. {Reprint # 44}
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1985
Cain, D. J. and Luoma, S. N. (1985). Copper and silver accumulation in transplanted and resident clams (Macoma balthica) in South San Francisco Bay. Marine Environmental Research 15, 115-135. {Reprint # 27}
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Harvey, R. W.(1985). Separation of solute and particulate vectors of heavy metal uptake in controlled suspension-feeding experiments with Macoma balthica. Hydrobiologia 121, 97-102. {Reprint # 35}

Harvey, R. W. and Luoma, S. N. (1985). Effect and adherent bacteria and bacterial extracellular polymers upon assimilation by Macoma balthica of Sediment-bound Cd, Zn and Ag. Marine Ecology 22, 281-289. {Reprint # 39}

Luoma, S. N., Cain, D. J., and Johansson, C. (1985). Temporal Fluctuations of Silver, Copper and Zinc In the Bivalve Macoma balthica at Five Stations in South San Francisco Bay. Hydrobiologia 129, 109-120. {Reprint # 43}

Luoma, S. N. (1985). Biological Availability of Sediment-bound Trace Metals. In 'La Baie de Seine (Greco-Manche) IFREMER'. pp. 347-362. (Actes de Colloques). {Reprint # 42}

Luoma, S. N.(1985). Affected Ecosystems: Book Review of Effects of the Pollutants at the Ecosystem Level. Bioscience 35, 657-658. {Reprint # 40}

Thomson-Becker, E. A. and Luoma, S. N. (1985). Temporal fluctuations in grain size, organic materials and iron concentrations in intertidal surface sediment of San Francisco Bay. Hydrobiologia 129, 91-107. {Reprint # 38}

1984
Harvey, R. W. and Luoma, S. N. (1984). The role of bacterial exopolymer and suspended bacteria in the nutrition of the deposit-feeding clam Macoma balthica. Journal of Marine Research 42, 957-968. {Reprint # 29}

Luoma, S. N., Cascos, P. V., and Dagovitz, R. M. (1984). Trace Metals in Suisun Bay, California: A Preliminary Report. U.S. Geological Survey. Water Resources Investigations Report 84-4170, 35. {Reprint # 36}
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Luoma, S. N. (1984). Contaminants in the upper Mississippi River: Summary and Conclusions. In 'Proceedings 15th Annual Meeting of the Mississippi River Research Consortium'. (Ed J. G. Wiener.) pp. 346-356.). {Reprint # 33}

Thomson, E. A., Luoma, S. N., Johansson, C. E., and Cain, D. J. (1984). Comparison of sediments and organisms in identifying sources of biologically available trace metal contamination. Water Research 18, 756-765. {Reprint # 30}
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1983
Harvey, R. W., L.W., L., and Young, L. Y. (1983). Transport and distribution of bacteria and diatoms in the aqueous surface microlayer of a salt marsh. Estuarine Coastal and Shelf Science 16, 543-547. {Reprint # 32}

Luoma, S. N.(1983). Bioavailability of trace metals to aquatic organisms--A Review. Science of the Total Environment 28, 1-22. {Reprint # 26}

Luoma, S. N., Cain, D. J., Ho, D., and Hutchinson. (1983). Variable tolerance to copper in two species from San Francisco Bay. Marine Environmental Research 10, 209-222. {Reprint # 18}

Luoma, S. N. and Davis, J. A. (1983). Requirements for modeling trace metal partitioning in oxidized estuarine sediments. Marine Chemistry 12, 159-181. {Reprint # 24}
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1982
Harvey, R. W., Lion, L. W., Young, L. Y., and Leckie, J. O. (1982). Enrichment and association of lead and bacteria at particulate surfaces in a salt-marsh surface layer. Journal of Marine Research 40, 1201-1211. {Reprint # 31}

Luoma, S. N. and Cloern, J. E. (1982). The Impact of Waste-water Discharge on Biological Communities in San Francisco Bay. In 'San Francisco Bay: Use and Protection'. (Ed L. Kockleman.) pp. 137-160.(Pacific Division AAAS). {Reprint # 23} Full Article (Adobe pdf, 430kb)

Luoma, S. N., Bryan, G. W., and Langston, W. J. (1982). Scavenging of heavy metals from particulates by brown seaweed. Marine Pollution Bulletin 13, 394-396. {Reprint # 20}
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Luoma, S. N. and Bryan, G. W. (1982). A statistical study of environmental factors controlling concentrations of heavy metals in the burrowing bivalve scorbicularia plana and the polychaete Neris diversicolor. Estuarine, Coastal and Shelf Science 15, 95-108. {Reprint # 17}

1981
Luoma, S. N. and Bryan, G. W. (1981). Statistical assessment of the form of trace metals in oxidized estuarine sediments employing chemical extractants. Science of the Total Environment 17, 166-196. {Reprint # 12}
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Strong, C. R. and Luoma, S. N. (1981). Variations in correlation of body size with concentrations of Cu and Ag in the bivalve Macoma balthica. Can. J. Fish. Aquat. Sci. 38, 1059-1064. {Reprint # 21}

1980
Bradford, L. and Luoma, S. N. (1980). Some Perspectives on Heavy Metal Concentrations in Shellfish and Sediment in San Francisco Bay, California. In 'Contaminants and Sediments'. (Ed R. A. Baker.) pp. 501-532.). {Reprint # 15}

Thomson, E. A., Luoma, S. N., Cain, D. J., and Johansson, C. E. (1980). The effect of sample storage on the extraction of Cu, Zn, Fe, Mn and organic material from oxidized estuarine sediments. Water, Air & Soil Pollution 14, 215-233. {Reprint # 16}

1979
Luoma, S. N. and Bryan, G. W. (1979). Trace Metal Bioavailability: Modeling Chemical and Biological Interactions of Sediment Bound Zinc. In 'Chemical Modeling in Aqueous Systems. ACS Symposium Series 93'. (Ed E. A. Jenne.) pp. 577-609.). {Reprint # 11}

Luoma, S. N. and Cain, D. J. (1979). Fluctuations of copper, zinc, and silver in tellenid clams as related to freshwater discharge--South San Francisco Bay. In 'San Francisco Bay: The Urbanized Estuary'. (Ed T. J. Conomos.) pp. 231-246.). {Reprint # 9}

1978
Luoma, S. N. and Bryan, G. W. (1978). Factors controlling availability of sediment-bound lead to the estuarine bivalve Scorbicularia plana. J. Mar. Biol. Assoc. , UK 58, 793-802. {Reprint # 10}

1977
Jenne, E. A. and Luoma, S. N. (1977). Forms of trace elements In soils, sediments, and associated Waters: An overview of their determination and biological availability. In 'Biological Implications of Metals in the Environment'. (Ed R. W. Wildung.) pp. 110-143.). {Reprint # 6}

Luoma, S. N., Wellise, C., Cain, D. J., Brown, C., Hornberger, M., and Bouse, R. (1977). Near field receiving water monitoring of trace metals in clams (Macoma Balthica) and sediments near the Palo Alto San Jose/Sunnyvale Water Quality Control Plants in South San Francisco Bay, California, 1977. Open File Report 98-563, 66. U.S. Geological Survey. {Reprint # 76-98}

Luoma, S. N.(1977). Physiological characteristics of mercury uptake by two estuarine species. Marine Biology 41, 269-273. {Reprint # 2}

Luoma, S. N.(1977). Dynamics of biologically available mercury in a small estuary. Journal Estuaries & Coastal Marine Science 5, 643-652. {Reprint # 1}

Luoma, S. N. and Jenne, E. A. (1977). The availability of sediment-bound cobalt, silver, and zinc to a deposit-feeding clam. In 'Biological Implications of Metals in the Environment'. (Ed R. W. Wildung.) pp. 213-230.). {Reprint # 5}

1976
Luoma, S. N. and Jenne, E. A. (1976). Factors affecting the availability of sediment-bound cadmium to the estuarine deposit-feeding Clam, Macoma balthica. In 'Radioecology & Energy Resources: Proc. of Fourth Nat. Symp. In Radioecology'. (Ed E. Cushing.) pp. 283-291.). {Reprint # 4}

Luoma, S. N.(1976). The uptake and interorgan distribution of mercury in a carnivorous crab. Bull. Environmental Contamination and Toxicology 16, 719-723. {Reprint # 3}

Luoma, S. N. and Jenne, E. A. (1976). Estimating Bioavailability of Sediment-bound Trace Metals with Chemical Extractants. In 'Trace Substances in Environmental Health'. (Ed D. D. Hemphill.) pp. 343-351.). {Reprint # 7}